Index

_

__version__ (in module aiqclib)

A

add_k_fold() (aiqclib.prepare.step6_split_dataset.dataset_a.SplitDataSetA method) (aiqclib.prepare.step6_split_dataset.dataset_all.SplitDataSetAll method) (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method) adiabatic_lapse_rate() (in module aiqclib.common.utils.seawater) aggregate_profile_stats() (in module aiqclib.common.utils.normalization) aiqclib module aiqclib.classify module aiqclib.classify.step1_read_input module aiqclib.classify.step1_read_input.dataset_all module aiqclib.classify.step2_calc_stats module aiqclib.classify.step2_calc_stats.dataset_all module aiqclib.classify.step3_select_profiles module aiqclib.classify.step3_select_profiles.dataset_all module aiqclib.classify.step4_select_rows module aiqclib.classify.step4_select_rows.dataset_all module aiqclib.classify.step5_extract_features module aiqclib.classify.step5_extract_features.dataset_all module aiqclib.classify.step6_classify_dataset module aiqclib.classify.step6_classify_dataset.dataset_all module aiqclib.classify.step6_classify_dataset.dataset_all_suite module aiqclib.classify.step7_concat_datasets module aiqclib.classify.step7_concat_datasets.concat_base module aiqclib.classify.step7_concat_datasets.dataset_all module aiqclib.classify.step7_concat_datasets.dataset_suite module aiqclib.common module aiqclib.common.base module aiqclib.common.base.config_base module aiqclib.common.base.dataset_base module aiqclib.common.base.feature_base module aiqclib.common.base.model_base module aiqclib.common.base.scikit_learn_model_base module aiqclib.common.config module aiqclib.common.config.classify_config module aiqclib.common.config.dataset_config module aiqclib.common.config.nrtqc_config module aiqclib.common.config.training_config module aiqclib.common.config.yaml_schema module aiqclib.common.config.yaml_templates module aiqclib.common.loader module aiqclib.common.loader.classify_loader module aiqclib.common.loader.classify_registry module aiqclib.common.loader.dataset_loader module aiqclib.common.loader.dataset_registry module aiqclib.common.loader.feature_loader module aiqclib.common.loader.feature_registry module aiqclib.common.loader.model_loader module aiqclib.common.loader.model_registry module aiqclib.common.loader.nrtqc_loader module aiqclib.common.loader.nrtqc_registry module aiqclib.common.loader.single_model_loader module aiqclib.common.loader.single_model_registry module aiqclib.common.loader.training_loader module aiqclib.common.loader.training_registry module aiqclib.common.utils module aiqclib.common.utils.config module aiqclib.common.utils.file module aiqclib.common.utils.input_preprocess module aiqclib.common.utils.input_validation module aiqclib.common.utils.metric_plots module aiqclib.common.utils.normalization module aiqclib.common.utils.qc_flags module aiqclib.common.utils.seawater module aiqclib.common.utils.shap_io module aiqclib.interface module aiqclib.interface.classify module aiqclib.interface.config module aiqclib.interface.nrtqc module aiqclib.interface.prepare module aiqclib.interface.shap_io module aiqclib.interface.stats module aiqclib.interface.train module aiqclib.nrtqc module aiqclib.nrtqc.step1_read_input module aiqclib.nrtqc.step1_read_input.dataset_all module aiqclib.nrtqc.step2_run_qc module aiqclib.nrtqc.step2_run_qc.dataset_all module

aiqclib.nrtqc.step2_run_qc.qc_base module aiqclib.nrtqc.step3_concat_flags module aiqclib.nrtqc.step3_concat_flags.concat_base module aiqclib.nrtqc.step3_concat_flags.dataset_all module aiqclib.nrtqc.step4_compare_flags module aiqclib.nrtqc.step4_compare_flags.compare_base module aiqclib.nrtqc.step4_compare_flags.dataset_all module aiqclib.prepare module aiqclib.prepare.features module aiqclib.prepare.features.basic_values module aiqclib.prepare.features.day_of_year module aiqclib.prepare.features.flank_down module aiqclib.prepare.features.flank_up module aiqclib.prepare.features.location module aiqclib.prepare.features.profile_summary module aiqclib.prepare.features.qc_density_inversion module aiqclib.prepare.features.qc_digit_rollover module aiqclib.prepare.features.qc_global_range module aiqclib.prepare.features.qc_gradient module aiqclib.prepare.features.qc_impossible_date module aiqclib.prepare.features.qc_impossible_location module aiqclib.prepare.features.qc_item_base module aiqclib.prepare.features.qc_pressure_increasing module aiqclib.prepare.features.qc_regional_range module aiqclib.prepare.features.qc_spike module aiqclib.prepare.features.qc_stuck_value module aiqclib.prepare.features.qc_temp_to_psal module aiqclib.prepare.step1_read_input module aiqclib.prepare.step1_read_input.dataset_a module aiqclib.prepare.step1_read_input.input_base module aiqclib.prepare.step2_calc_stats module aiqclib.prepare.step2_calc_stats.dataset_a module aiqclib.prepare.step2_calc_stats.summary_base module aiqclib.prepare.step3_select_profiles module aiqclib.prepare.step3_select_profiles.dataset_a module aiqclib.prepare.step3_select_profiles.dataset_all module aiqclib.prepare.step3_select_profiles.select_base module aiqclib.prepare.step4_select_rows module aiqclib.prepare.step4_select_rows.dataset_a module aiqclib.prepare.step4_select_rows.dataset_all module aiqclib.prepare.step4_select_rows.locate_base module aiqclib.prepare.step5_extract_features module aiqclib.prepare.step5_extract_features.dataset_a module aiqclib.prepare.step5_extract_features.extract_base module aiqclib.prepare.step6_split_dataset module aiqclib.prepare.step6_split_dataset.dataset_a module aiqclib.prepare.step6_split_dataset.dataset_all module aiqclib.prepare.step6_split_dataset.split_base module aiqclib.train module aiqclib.train.models module aiqclib.train.models.decision_tree module aiqclib.train.models.gaussian_naive_bayes module aiqclib.train.models.k_nearest_neighbors module aiqclib.train.models.linear_discriminant_analysis module aiqclib.train.models.logistic_regression module aiqclib.train.models.model_suite module aiqclib.train.models.multilayer_perceptron module aiqclib.train.models.random_forest module aiqclib.train.models.support_vector_machine module aiqclib.train.models.xgboost module aiqclib.train.step1_read_input module aiqclib.train.step1_read_input.dataset_a module aiqclib.train.step1_read_input.input_base module aiqclib.train.step2_validate_model module aiqclib.train.step2_validate_model.kfold_validation module aiqclib.train.step2_validate_model.kfold_validation_suite module aiqclib.train.step2_validate_model.validate_base module aiqclib.train.step3_optimise_model module aiqclib.train.step4_build_model module aiqclib.train.step4_build_model.build_model module aiqclib.train.step4_build_model.build_model_base module aiqclib.train.step4_build_model.build_model_suite module apply_normalization() (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase method) AUTO_SCALING_TYPES (in module aiqclib.common.utils.normalization) auto_select() (aiqclib.common.base.config_base.ConfigBase method)

B

base_model (aiqclib.train.step2_validate_model.validate_base.ValidationBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) BasicValues (class in aiqclib.prepare.features.basic_values) build() (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll method) (aiqclib.classify.step6_classify_dataset.dataset_all_suite.ClassifyAllSuite method) (aiqclib.common.base.model_base.ModelBase method) (aiqclib.common.base.scikit_learn_model_base.SklearnModelBase method) (aiqclib.train.models.model_suite.ModelSuite method) (aiqclib.train.step4_build_model.build_model.BuildModel method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) (aiqclib.train.step4_build_model.build_model_suite.BuildModelSuite method)

build_final_model() (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll method) (aiqclib.classify.step6_classify_dataset.dataset_all_suite.ClassifyAllSuite method) (aiqclib.train.step4_build_model.build_model.BuildModel method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) (aiqclib.train.step4_build_model.build_model_suite.BuildModelSuite method) build_final_model_targets() (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) BUILD_MODEL_REGISTRY (in module aiqclib.common.loader.training_registry) build_scaling_expr() (in module aiqclib.common.utils.normalization) build_targets() (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) BuildModel (class in aiqclib.train.step4_build_model.build_model) BuildModelBase (class in aiqclib.train.step4_build_model.build_model_base) BuildModelSuite (class in aiqclib.train.step4_build_model.build_model_suite)

C

calculate_global_stats() (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase method) calculate_profile_stats() (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase method) calculate_shap() (aiqclib.common.base.scikit_learn_model_base.SklearnModelBase method) calculate_stats() (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase method) ClassificationConfig (class in aiqclib.common.config.classify_config) CLASSIFY_CLASSIFY_REGISTRY (in module aiqclib.common.loader.classify_registry) CLASSIFY_CONCAT_REGISTRY (in module aiqclib.common.loader.classify_registry) classify_dataset() (in module aiqclib) (in module aiqclib.interface.classify) ClassifyAll (class in aiqclib.classify.step6_classify_dataset.dataset_all) ClassifyAllSuite (class in aiqclib.classify.step6_classify_dataset.dataset_all_suite) compare() (aiqclib.nrtqc.step4_compare_flags.compare_base.CompareFlagsBase method) COMPARE_NRTQC_REGISTRY (in module aiqclib.common.loader.nrtqc_registry) compare_targets() (aiqclib.nrtqc.step4_compare_flags.compare_base.CompareFlagsBase method) CompareFlagsAll (class in aiqclib.nrtqc.step4_compare_flags.dataset_all) CompareFlagsBase (class in aiqclib.nrtqc.step4_compare_flags.compare_base) compute_flags() (aiqclib.prepare.features.qc_density_inversion.QCDensityInversion method) (aiqclib.prepare.features.qc_digit_rollover.QCDigitRollover method) (aiqclib.prepare.features.qc_global_range.QCGlobalRange method) (aiqclib.prepare.features.qc_impossible_date.QCImpossibleDate method) (aiqclib.prepare.features.qc_impossible_location.QCImpossibleLocation method) (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase method) (aiqclib.prepare.features.qc_item_base.QCNeighborStencilBase method) (aiqclib.prepare.features.qc_pressure_increasing.QCPressureIncreasing method) (aiqclib.prepare.features.qc_stuck_value.QCStuckValue method) (aiqclib.prepare.features.qc_temp_to_psal.QCTempToPsal method)

concat_flags() (aiqclib.nrtqc.step3_concat_flags.concat_base.ConcatFlagsBase method) CONCAT_NRTQC_REGISTRY (in module aiqclib.common.loader.nrtqc_registry) ConcatDataSetAll (class in aiqclib.classify.step7_concat_datasets.dataset_all) (class in aiqclib.nrtqc.step3_concat_flags.dataset_all) ConcatDatasetsBase (class in aiqclib.classify.step7_concat_datasets.concat_base) ConcatDataSetSuite (class in aiqclib.classify.step7_concat_datasets.dataset_suite) ConcatFlagsBase (class in aiqclib.nrtqc.step3_concat_flags.concat_base) config (aiqclib.common.base.dataset_base.DataSetBase attribute) ConfigBase (class in aiqclib.common.base.config_base) convert_cosine() (aiqclib.prepare.features.day_of_year.DayOfYearFeat method) convert_sine() (aiqclib.prepare.features.day_of_year.DayOfYearFeat method) create_columns() (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase method) create_identifier_columns() (in module aiqclib.common.utils.input_preprocess) create_metric_plots() (aiqclib.classify.step6_classify_dataset.dataset_all_suite.ClassifyAllSuite method) (aiqclib.train.step2_validate_model.validate_base.ValidationBase method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) (aiqclib.train.step4_build_model.build_model_suite.BuildModelSuite method) (in module aiqclib.common.utils.metric_plots) create_multi_method_metric_plots() (in module aiqclib.common.utils.metric_plots) create_report() (aiqclib.common.base.scikit_learn_model_base.SklearnModelBase method) create_summary_stats_observation() (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase method) create_summary_stats_profile() (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase method) create_training_dataset() (in module aiqclib) (in module aiqclib.interface.prepare)

D

DataSetBase (class in aiqclib.common.base.dataset_base) DataSetConfig (class in aiqclib.common.config.dataset_config) DayOfYearFeat (class in aiqclib.prepare.features.day_of_year) DecisionTree (class in aiqclib.train.models.decision_tree) DEFAULT_CREATED_COLUMNS (in module aiqclib.common.utils.input_preprocess) default_file_name (aiqclib.classify.step2_calc_stats.dataset_all.SummaryDataSetAll attribute) (aiqclib.classify.step3_select_profiles.dataset_all.SelectDataSetAll attribute) (aiqclib.classify.step4_select_rows.dataset_all.LocateDataSetAll attribute) (aiqclib.classify.step5_extract_features.dataset_all.ExtractDataSetAll attribute) (aiqclib.classify.step7_concat_datasets.concat_base.ConcatDatasetsBase attribute) (aiqclib.nrtqc.step2_run_qc.qc_base.QCDataSetBase attribute) (aiqclib.nrtqc.step3_concat_flags.concat_base.ConcatFlagsBase attribute) (aiqclib.nrtqc.step4_compare_flags.compare_base.CompareFlagsBase attribute) (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase attribute) (aiqclib.prepare.step3_select_profiles.select_base.ProfileSelectionBase attribute) (aiqclib.prepare.step4_select_rows.locate_base.LocatePositionBase attribute) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) default_file_names (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll attribute) (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase attribute) (aiqclib.train.step1_read_input.input_base.InputTrainingSetBase attribute) (aiqclib.train.step2_validate_model.validate_base.ValidationBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) default_k_fold (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase attribute) (aiqclib.train.step2_validate_model.kfold_validation.KFoldValidation attribute) (aiqclib.train.step2_validate_model.kfold_validation_suite.KFoldValidationSuite attribute) DEFAULT_KEY_COLUMNS (in module aiqclib.common.utils.input_preprocess)

default_model_file_name (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) default_params (aiqclib.prepare.features.qc_density_inversion.QCDensityInversion attribute) (aiqclib.prepare.features.qc_digit_rollover.QCDigitRollover attribute) (aiqclib.prepare.features.qc_global_range.QCGlobalRange attribute) (aiqclib.prepare.features.qc_gradient.QCGradient attribute) (aiqclib.prepare.features.qc_impossible_date.QCImpossibleDate attribute) (aiqclib.prepare.features.qc_impossible_location.QCImpossibleLocation attribute) (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase attribute) (aiqclib.prepare.features.qc_regional_range.QCRegionalRange attribute) (aiqclib.prepare.features.qc_spike.QCSpike attribute) (aiqclib.prepare.features.qc_stuck_value.QCStuckValue attribute) (aiqclib.prepare.features.qc_temp_to_psal.QCTempToPsal attribute) DEFAULT_SORT_COLUMNS (in module aiqclib.common.utils.input_preprocess) default_test_set_fraction (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase attribute) DEFERRED_QC_ITEMS (in module aiqclib.nrtqc.step2_run_qc.qc_base) density_at_surface() (in module aiqclib.common.utils.seawater) derive_observation_stats() (in module aiqclib.common.utils.normalization) derive_profile_stats() (in module aiqclib.common.utils.normalization) drop_col_names (aiqclib.classify.step5_extract_features.dataset_all.ExtractDataSetAll attribute) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) (aiqclib.prepare.step6_split_dataset.dataset_a.SplitDataSetA attribute) (aiqclib.prepare.step6_split_dataset.dataset_all.SplitDataSetAll attribute) drop_cols (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll attribute) drop_columns() (aiqclib.prepare.step6_split_dataset.dataset_a.SplitDataSetA method) (aiqclib.prepare.step6_split_dataset.dataset_all.SplitDataSetAll method) (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method)

E

expected_class_name (aiqclib.classify.step1_read_input.dataset_all.InputDataSetAll attribute) (aiqclib.classify.step2_calc_stats.dataset_all.SummaryDataSetAll attribute) (aiqclib.classify.step3_select_profiles.dataset_all.SelectDataSetAll attribute) (aiqclib.classify.step4_select_rows.dataset_all.LocateDataSetAll attribute) (aiqclib.classify.step5_extract_features.dataset_all.ExtractDataSetAll attribute) (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll attribute) (aiqclib.classify.step6_classify_dataset.dataset_all_suite.ClassifyAllSuite attribute) (aiqclib.classify.step7_concat_datasets.dataset_all.ConcatDataSetAll attribute) (aiqclib.classify.step7_concat_datasets.dataset_suite.ConcatDataSetSuite attribute) (aiqclib.common.base.config_base.ConfigBase attribute) (aiqclib.common.base.dataset_base.DataSetBase attribute) (aiqclib.common.base.model_base.ModelBase attribute) (aiqclib.common.config.classify_config.ClassificationConfig attribute) (aiqclib.common.config.dataset_config.DataSetConfig attribute) (aiqclib.common.config.nrtqc_config.NRTQCConfig attribute) (aiqclib.common.config.training_config.TrainingConfig attribute) (aiqclib.nrtqc.step1_read_input.dataset_all.InputDataSetAll attribute) (aiqclib.nrtqc.step2_run_qc.dataset_all.QCDataSetAll attribute) (aiqclib.nrtqc.step3_concat_flags.dataset_all.ConcatDataSetAll attribute) (aiqclib.nrtqc.step4_compare_flags.dataset_all.CompareFlagsAll attribute) (aiqclib.prepare.step1_read_input.dataset_a.InputDataSetA attribute) (aiqclib.prepare.step2_calc_stats.dataset_a.SummaryDataSetA attribute) (aiqclib.prepare.step3_select_profiles.dataset_a.SelectDataSetA attribute) (aiqclib.prepare.step3_select_profiles.dataset_all.SelectDataSetAll attribute) (aiqclib.prepare.step4_select_rows.dataset_a.LocateDataSetA attribute) (aiqclib.prepare.step4_select_rows.dataset_all.LocateDataSetAll attribute) (aiqclib.prepare.step5_extract_features.dataset_a.ExtractDataSetA attribute) (aiqclib.prepare.step6_split_dataset.dataset_a.SplitDataSetA attribute) (aiqclib.prepare.step6_split_dataset.dataset_all.SplitDataSetAll attribute) (aiqclib.train.models.decision_tree.DecisionTree attribute) (aiqclib.train.models.gaussian_naive_bayes.GaussianNaiveBayes attribute) (aiqclib.train.models.k_nearest_neighbors.KNearestNeighbors attribute) (aiqclib.train.models.linear_discriminant_analysis.LinearDiscriminantAnalysis attribute) (aiqclib.train.models.logistic_regression.LogisticRegression attribute) (aiqclib.train.models.model_suite.ModelSuite attribute) (aiqclib.train.models.multilayer_perceptron.MultilayerPerceptron attribute) (aiqclib.train.models.random_forest.RandomForest attribute) (aiqclib.train.models.support_vector_machine.SupportVectorMachine attribute) (aiqclib.train.models.xgboost.XGBoost attribute) (aiqclib.train.step1_read_input.dataset_a.InputTrainingSetA attribute) (aiqclib.train.step2_validate_model.kfold_validation.KFoldValidation attribute) (aiqclib.train.step2_validate_model.kfold_validation_suite.KFoldValidationSuite attribute) (aiqclib.train.step4_build_model.build_model.BuildModel attribute) (aiqclib.train.step4_build_model.build_model_suite.BuildModelSuite attribute)

EXTRACT_CLASSIFY_REGISTRY (in module aiqclib.common.loader.classify_registry) EXTRACT_DATASET_REGISTRY (in module aiqclib.common.loader.dataset_registry) extract_features() (aiqclib.common.base.feature_base.FeatureBase method) (aiqclib.prepare.features.basic_values.BasicValues method) (aiqclib.prepare.features.day_of_year.DayOfYearFeat method) (aiqclib.prepare.features.flank_down.FlankDown method) (aiqclib.prepare.features.flank_up.FlankUp method) (aiqclib.prepare.features.location.LocationFeat method) (aiqclib.prepare.features.profile_summary.ProfileSummaryStats method) (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase method) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase method) extract_target_features() (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase method) ExtractDataSetA (class in aiqclib.prepare.step5_extract_features.dataset_a) ExtractDataSetAll (class in aiqclib.classify.step5_extract_features.dataset_all) ExtractFeatureBase (class in aiqclib.prepare.step5_extract_features.extract_base)

F

fail_flag (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase attribute) feature_info (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) FEATURE_REGISTRY (in module aiqclib.common.loader.feature_registry) FeatureBase (class in aiqclib.common.base.feature_base) filter_rows() (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase method) filtered_input (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) final_models (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) find_profile_pairs() (aiqclib.prepare.step3_select_profiles.dataset_a.SelectDataSetA method) FLAG_BAD (in module aiqclib.common.utils.qc_flags)

flag_column_name() (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase method) FLAG_GOOD (in module aiqclib.common.utils.qc_flags) FLAG_PROBABLY_BAD (in module aiqclib.common.utils.qc_flags) FLAG_SEVERITY_ORDER (in module aiqclib.common.utils.qc_flags) FlagExpr (in module aiqclib.common.utils.qc_flags) FlankDown (class in aiqclib.prepare.features.flank_down) FlankUp (class in aiqclib.prepare.features.flank_up) format_summary_stats() (in module aiqclib) (in module aiqclib.interface.stats)

G

GaussianNaiveBayes (class in aiqclib.train.models.gaussian_naive_bayes) get_base_class() (aiqclib.common.base.config_base.ConfigBase method) get_base_path() (aiqclib.common.base.config_base.ConfigBase method) get_classification_config_schema() (in module aiqclib.common.config.yaml_schema) get_config_classify_set_full_template() (in module aiqclib.common.config.yaml_templates) get_config_classify_set_template() (in module aiqclib.common.config.yaml_templates) get_config_data_set_all_template() (in module aiqclib.common.config.yaml_templates) get_config_data_set_full_template() (in module aiqclib.common.config.yaml_templates) get_config_data_set_template() (in module aiqclib.common.config.yaml_templates) get_config_file() (in module aiqclib.common.utils.config) get_config_item() (in module aiqclib.common.utils.config) get_config_nrtqc_template() (in module aiqclib.common.config.yaml_templates) get_config_train_set_template() (in module aiqclib.common.config.yaml_templates) get_data_set_config_schema() (in module aiqclib.common.config.yaml_schema) get_dataset_folder_name() (aiqclib.common.base.config_base.ConfigBase method) get_file_name() (aiqclib.common.base.config_base.ConfigBase method) get_full_file_name() (aiqclib.common.base.config_base.ConfigBase method) get_k_fold() (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method) (aiqclib.train.step2_validate_model.kfold_validation.KFoldValidation method) (aiqclib.train.step2_validate_model.kfold_validation_suite.KFoldValidationSuite method) get_model_params() (aiqclib.common.base.config_base.ConfigBase method)

get_normalization_file_name() (aiqclib.common.base.config_base.ConfigBase method) get_nrtqc_config_schema() (in module aiqclib.common.config.yaml_schema) get_qc_item_names() (aiqclib.common.config.nrtqc_config.NRTQCConfig method) get_qc_items() (aiqclib.common.config.nrtqc_config.NRTQCConfig method) get_skip_evaluation() (aiqclib.common.base.config_base.ConfigBase method) get_stats_expression() (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase static method) get_step_folder_name() (aiqclib.common.base.config_base.ConfigBase method) get_step_params() (aiqclib.common.base.config_base.ConfigBase method) get_summary_stats() (aiqclib.common.base.config_base.ConfigBase method) (in module aiqclib) (in module aiqclib.interface.stats) get_target_dict() (aiqclib.common.base.config_base.ConfigBase method) get_target_file_names() (aiqclib.common.base.config_base.ConfigBase method) get_target_names() (aiqclib.common.base.config_base.ConfigBase method) get_target_variables() (aiqclib.common.base.config_base.ConfigBase method) get_test_set_fraction() (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method) get_training_config_schema() (in module aiqclib.common.config.yaml_schema) get_variable_flag() (aiqclib.common.config.nrtqc_config.NRTQCConfig method) get_variables() (aiqclib.prepare.features.qc_density_inversion.QCDensityInversion method) (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase method) (aiqclib.prepare.features.qc_temp_to_psal.QCTempToPsal method)

I

INPUT_CLASSIFY_REGISTRY (in module aiqclib.common.loader.classify_registry) input_data (aiqclib.nrtqc.step2_run_qc.qc_base.QCDataSetBase attribute) (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase attribute) (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase attribute) (aiqclib.prepare.step3_select_profiles.select_base.ProfileSelectionBase attribute) (aiqclib.prepare.step4_select_rows.locate_base.LocatePositionBase attribute) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) INPUT_DATASET_REGISTRY (in module aiqclib.common.loader.dataset_registry) input_file_name (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase attribute) input_file_names (aiqclib.train.step1_read_input.input_base.InputTrainingSetBase attribute) INPUT_NRTQC_REGISTRY (in module aiqclib.common.loader.nrtqc_registry) INPUT_TRAINING_SET_REGISTRY (in module aiqclib.common.loader.training_registry) InputDataSetA (class in aiqclib.prepare.step1_read_input.dataset_a) InputDataSetAll (class in aiqclib.classify.step1_read_input.dataset_all) (class in aiqclib.nrtqc.step1_read_input.dataset_all) InputDataSetBase (class in aiqclib.prepare.step1_read_input.input_base)

InputTrainingSetA (class in aiqclib.train.step1_read_input.dataset_a) InputTrainingSetBase (class in aiqclib.train.step1_read_input.input_base) is_flag_missing() (aiqclib.common.base.config_base.ConfigBase static method) is_scaling_type() (in module aiqclib.common.utils.normalization) item_name (aiqclib.prepare.features.qc_density_inversion.QCDensityInversion attribute) (aiqclib.prepare.features.qc_digit_rollover.QCDigitRollover attribute) (aiqclib.prepare.features.qc_global_range.QCGlobalRange attribute) (aiqclib.prepare.features.qc_gradient.QCGradient attribute) (aiqclib.prepare.features.qc_impossible_date.QCImpossibleDate attribute) (aiqclib.prepare.features.qc_impossible_location.QCImpossibleLocation attribute) (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase attribute) (aiqclib.prepare.features.qc_pressure_increasing.QCPressureIncreasing attribute) (aiqclib.prepare.features.qc_regional_range.QCRegionalRange attribute) (aiqclib.prepare.features.qc_spike.QCSpike attribute) (aiqclib.prepare.features.qc_stuck_value.QCStuckValue attribute) (aiqclib.prepare.features.qc_temp_to_psal.QCTempToPsal attribute)

K

keep_years() (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase method) key_col_names (aiqclib.classify.step3_select_profiles.dataset_all.SelectDataSetAll attribute)

KFoldValidation (class in aiqclib.train.step2_validate_model.kfold_validation) KFoldValidationSuite (class in aiqclib.train.step2_validate_model.kfold_validation_suite) KNearestNeighbors (class in aiqclib.train.models.k_nearest_neighbors)

L

label_profiles() (aiqclib.classify.step3_select_profiles.dataset_all.SelectDataSetAll method) (aiqclib.prepare.step3_select_profiles.dataset_a.SelectDataSetA method) (aiqclib.prepare.step3_select_profiles.dataset_all.SelectDataSetAll method) (aiqclib.prepare.step3_select_profiles.select_base.ProfileSelectionBase method) LinearDiscriminantAnalysis (class in aiqclib.train.models.linear_discriminant_analysis) load_base_model() (aiqclib.train.step2_validate_model.validate_base.ValidationBase method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) load_classify_step1_input_dataset() (in module aiqclib.common.loader.classify_loader) load_classify_step2_summary_dataset() (in module aiqclib.common.loader.classify_loader) load_classify_step3_select_dataset() (in module aiqclib.common.loader.classify_loader) load_classify_step4_locate_dataset() (in module aiqclib.common.loader.classify_loader) load_classify_step5_extract_dataset() (in module aiqclib.common.loader.classify_loader) load_classify_step6_classify_dataset() (in module aiqclib.common.loader.classify_loader) load_classify_step7_concat_dataset() (in module aiqclib.common.loader.classify_loader) load_feature_class() (in module aiqclib.common.loader.feature_loader) load_model() (aiqclib.common.base.model_base.ModelBase method) load_model_class() (in module aiqclib.common.loader.model_loader) load_model_class_with_class_name() (in module aiqclib.common.loader.model_loader) load_nrtqc_step1_input_dataset() (in module aiqclib.common.loader.nrtqc_loader) load_nrtqc_step2_qc_dataset() (in module aiqclib.common.loader.nrtqc_loader) load_nrtqc_step3_concat_dataset() (in module aiqclib.common.loader.nrtqc_loader) load_nrtqc_step4_compare_dataset() (in module aiqclib.common.loader.nrtqc_loader)

load_single_model_class() (in module aiqclib.common.loader.single_model_loader) load_single_model_class_with_class_name() (in module aiqclib.common.loader.single_model_loader) load_step1_input_dataset() (in module aiqclib.common.loader.dataset_loader) load_step1_input_training_set() (in module aiqclib.common.loader.training_loader) load_step2_model_validation_class() (in module aiqclib.common.loader.training_loader) load_step2_summary_dataset() (in module aiqclib.common.loader.dataset_loader) load_step3_select_dataset() (in module aiqclib.common.loader.dataset_loader) load_step4_build_model_class() (in module aiqclib.common.loader.training_loader) load_step4_locate_dataset() (in module aiqclib.common.loader.dataset_loader) load_step5_extract_dataset() (in module aiqclib.common.loader.dataset_loader) load_step6_split_dataset() (in module aiqclib.common.loader.dataset_loader) LOCATE_CLASSIFY_REGISTRY (in module aiqclib.common.loader.classify_registry) LOCATE_DATASET_REGISTRY (in module aiqclib.common.loader.dataset_registry) locate_target_rows() (aiqclib.classify.step4_select_rows.dataset_all.LocateDataSetAll method) (aiqclib.prepare.step4_select_rows.dataset_a.LocateDataSetA method) (aiqclib.prepare.step4_select_rows.dataset_all.LocateDataSetAll method) (aiqclib.prepare.step4_select_rows.locate_base.LocatePositionBase method) LocateDataSetA (class in aiqclib.prepare.step4_select_rows.dataset_a) LocateDataSetAll (class in aiqclib.classify.step4_select_rows.dataset_all) (class in aiqclib.prepare.step4_select_rows.dataset_all) LocatePositionBase (class in aiqclib.prepare.step4_select_rows.locate_base) LocationFeat (class in aiqclib.prepare.features.location) LogisticRegression (class in aiqclib.train.models.logistic_regression)

M

merge_predictions() (aiqclib.classify.step7_concat_datasets.concat_base.ConcatDatasetsBase method) (aiqclib.classify.step7_concat_datasets.dataset_suite.ConcatDataSetSuite method) merged_data (aiqclib.nrtqc.step3_concat_flags.concat_base.ConcatFlagsBase attribute) (aiqclib.nrtqc.step4_compare_flags.compare_base.CompareFlagsBase attribute) model_file_names (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) MODEL_REGISTRY (in module aiqclib.common.loader.model_registry) model_scores (aiqclib.train.step2_validate_model.validate_base.ValidationBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) MODEL_VALIDATION_REGISTRY (in module aiqclib.common.loader.training_registry) ModelBase (class in aiqclib.common.base.model_base) models (aiqclib.train.step2_validate_model.validate_base.ValidationBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) ModelSuite (class in aiqclib.train.models.model_suite) module aiqclib aiqclib.classify aiqclib.classify.step1_read_input aiqclib.classify.step1_read_input.dataset_all aiqclib.classify.step2_calc_stats aiqclib.classify.step2_calc_stats.dataset_all aiqclib.classify.step3_select_profiles aiqclib.classify.step3_select_profiles.dataset_all aiqclib.classify.step4_select_rows aiqclib.classify.step4_select_rows.dataset_all aiqclib.classify.step5_extract_features aiqclib.classify.step5_extract_features.dataset_all aiqclib.classify.step6_classify_dataset aiqclib.classify.step6_classify_dataset.dataset_all aiqclib.classify.step6_classify_dataset.dataset_all_suite aiqclib.classify.step7_concat_datasets aiqclib.classify.step7_concat_datasets.concat_base aiqclib.classify.step7_concat_datasets.dataset_all aiqclib.classify.step7_concat_datasets.dataset_suite aiqclib.common aiqclib.common.base aiqclib.common.base.config_base aiqclib.common.base.dataset_base aiqclib.common.base.feature_base aiqclib.common.base.model_base aiqclib.common.base.scikit_learn_model_base aiqclib.common.config aiqclib.common.config.classify_config aiqclib.common.config.dataset_config aiqclib.common.config.nrtqc_config aiqclib.common.config.training_config aiqclib.common.config.yaml_schema aiqclib.common.config.yaml_templates aiqclib.common.loader aiqclib.common.loader.classify_loader aiqclib.common.loader.classify_registry aiqclib.common.loader.dataset_loader aiqclib.common.loader.dataset_registry aiqclib.common.loader.feature_loader aiqclib.common.loader.feature_registry aiqclib.common.loader.model_loader aiqclib.common.loader.model_registry aiqclib.common.loader.nrtqc_loader aiqclib.common.loader.nrtqc_registry aiqclib.common.loader.single_model_loader aiqclib.common.loader.single_model_registry aiqclib.common.loader.training_loader aiqclib.common.loader.training_registry aiqclib.common.utils aiqclib.common.utils.config aiqclib.common.utils.file aiqclib.common.utils.input_preprocess aiqclib.common.utils.input_validation aiqclib.common.utils.metric_plots aiqclib.common.utils.normalization aiqclib.common.utils.qc_flags aiqclib.common.utils.seawater aiqclib.common.utils.shap_io aiqclib.interface aiqclib.interface.classify aiqclib.interface.config aiqclib.interface.nrtqc aiqclib.interface.prepare aiqclib.interface.shap_io aiqclib.interface.stats aiqclib.interface.train aiqclib.nrtqc aiqclib.nrtqc.step1_read_input aiqclib.nrtqc.step1_read_input.dataset_all aiqclib.nrtqc.step2_run_qc aiqclib.nrtqc.step2_run_qc.dataset_all aiqclib.nrtqc.step2_run_qc.qc_base aiqclib.nrtqc.step3_concat_flags aiqclib.nrtqc.step3_concat_flags.concat_base aiqclib.nrtqc.step3_concat_flags.dataset_all aiqclib.nrtqc.step4_compare_flags aiqclib.nrtqc.step4_compare_flags.compare_base aiqclib.nrtqc.step4_compare_flags.dataset_all aiqclib.prepare aiqclib.prepare.features aiqclib.prepare.features.basic_values aiqclib.prepare.features.day_of_year aiqclib.prepare.features.flank_down aiqclib.prepare.features.flank_up aiqclib.prepare.features.location aiqclib.prepare.features.profile_summary aiqclib.prepare.features.qc_density_inversion aiqclib.prepare.features.qc_digit_rollover aiqclib.prepare.features.qc_global_range aiqclib.prepare.features.qc_gradient aiqclib.prepare.features.qc_impossible_date aiqclib.prepare.features.qc_impossible_location aiqclib.prepare.features.qc_item_base aiqclib.prepare.features.qc_pressure_increasing aiqclib.prepare.features.qc_regional_range aiqclib.prepare.features.qc_spike aiqclib.prepare.features.qc_stuck_value aiqclib.prepare.features.qc_temp_to_psal aiqclib.prepare.step1_read_input aiqclib.prepare.step1_read_input.dataset_a aiqclib.prepare.step1_read_input.input_base aiqclib.prepare.step2_calc_stats aiqclib.prepare.step2_calc_stats.dataset_a aiqclib.prepare.step2_calc_stats.summary_base aiqclib.prepare.step3_select_profiles aiqclib.prepare.step3_select_profiles.dataset_a aiqclib.prepare.step3_select_profiles.dataset_all aiqclib.prepare.step3_select_profiles.select_base aiqclib.prepare.step4_select_rows aiqclib.prepare.step4_select_rows.dataset_a aiqclib.prepare.step4_select_rows.dataset_all aiqclib.prepare.step4_select_rows.locate_base aiqclib.prepare.step5_extract_features aiqclib.prepare.step5_extract_features.dataset_a aiqclib.prepare.step5_extract_features.extract_base aiqclib.prepare.step6_split_dataset aiqclib.prepare.step6_split_dataset.dataset_a aiqclib.prepare.step6_split_dataset.dataset_all aiqclib.prepare.step6_split_dataset.split_base aiqclib.train aiqclib.train.models aiqclib.train.models.decision_tree aiqclib.train.models.gaussian_naive_bayes aiqclib.train.models.k_nearest_neighbors aiqclib.train.models.linear_discriminant_analysis aiqclib.train.models.logistic_regression aiqclib.train.models.model_suite aiqclib.train.models.multilayer_perceptron aiqclib.train.models.random_forest aiqclib.train.models.support_vector_machine aiqclib.train.models.xgboost aiqclib.train.step1_read_input aiqclib.train.step1_read_input.dataset_a aiqclib.train.step1_read_input.input_base aiqclib.train.step2_validate_model aiqclib.train.step2_validate_model.kfold_validation aiqclib.train.step2_validate_model.kfold_validation_suite aiqclib.train.step2_validate_model.validate_base aiqclib.train.step3_optimise_model aiqclib.train.step4_build_model aiqclib.train.step4_build_model.build_model aiqclib.train.step4_build_model.build_model_base aiqclib.train.step4_build_model.build_model_suite

multi (aiqclib.common.base.model_base.ModelBase attribute) (aiqclib.train.models.model_suite.ModelSuite attribute) MultilayerPerceptron (class in aiqclib.train.models.multilayer_perceptron)

N

negative_rows (aiqclib.prepare.step4_select_rows.dataset_a.LocateDataSetA attribute) normalization_role (aiqclib.classify.step5_extract_features.dataset_all.ExtractDataSetAll attribute) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute)

NRTQCConfig (class in aiqclib.common.config.nrtqc_config)

O

OBSERVATION_KEYS (in module aiqclib.prepare.features.qc_item_base) order_column (aiqclib.prepare.features.qc_density_inversion.QCDensityInversion attribute) (aiqclib.prepare.features.qc_digit_rollover.QCDigitRollover attribute) (aiqclib.prepare.features.qc_item_base.QCNeighborStencilBase attribute) (aiqclib.prepare.features.qc_pressure_increasing.QCPressureIncreasing attribute) output_file_name (aiqclib.classify.step2_calc_stats.dataset_all.SummaryDataSetAll attribute) (aiqclib.classify.step3_select_profiles.dataset_all.SelectDataSetAll attribute) (aiqclib.classify.step7_concat_datasets.concat_base.ConcatDatasetsBase attribute) (aiqclib.nrtqc.step2_run_qc.qc_base.QCDataSetBase attribute) (aiqclib.nrtqc.step3_concat_flags.concat_base.ConcatFlagsBase attribute) (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase attribute) (aiqclib.prepare.step3_select_profiles.select_base.ProfileSelectionBase attribute)

output_file_names (aiqclib.classify.step4_select_rows.dataset_all.LocateDataSetAll attribute) (aiqclib.classify.step5_extract_features.dataset_all.ExtractDataSetAll attribute) (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll attribute) (aiqclib.nrtqc.step4_compare_flags.compare_base.CompareFlagsBase attribute) (aiqclib.prepare.step4_select_rows.locate_base.LocatePositionBase attribute) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase attribute) (aiqclib.train.step2_validate_model.validate_base.ValidationBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute)

P

params (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase attribute) PLATFORM_COLUMN (in module aiqclib.common.utils.input_preprocess) positive_rows (aiqclib.prepare.step4_select_rows.dataset_a.LocateDataSetA attribute) potential_temperature() (in module aiqclib.common.utils.seawater) predict() (aiqclib.common.base.scikit_learn_model_base.SklearnModelBase method) predictions (aiqclib.classify.step7_concat_datasets.concat_base.ConcatDatasetsBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute)

process_targets() (aiqclib.prepare.step4_select_rows.locate_base.LocatePositionBase method) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase method) (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method) (aiqclib.train.step1_read_input.input_base.InputTrainingSetBase method) (aiqclib.train.step2_validate_model.validate_base.ValidationBase method) PROFILE_KEYS (in module aiqclib.prepare.features.qc_item_base) ProfileSelectionBase (class in aiqclib.prepare.step3_select_profiles.select_base) ProfileSummaryStats (class in aiqclib.prepare.features.profile_summary)

Q

qc_data (aiqclib.nrtqc.step2_run_qc.qc_base.QCDataSetBase attribute) qc_item_columns() (aiqclib.nrtqc.step2_run_qc.qc_base.QCDataSetBase method) QC_NRTQC_REGISTRY (in module aiqclib.common.loader.nrtqc_registry) QCDataSetAll (class in aiqclib.nrtqc.step2_run_qc.dataset_all) QCDataSetBase (class in aiqclib.nrtqc.step2_run_qc.qc_base) QCDensityInversion (class in aiqclib.prepare.features.qc_density_inversion) QCDigitRollover (class in aiqclib.prepare.features.qc_digit_rollover) QCGlobalRange (class in aiqclib.prepare.features.qc_global_range) QCGradient (class in aiqclib.prepare.features.qc_gradient)

QCImpossibleDate (class in aiqclib.prepare.features.qc_impossible_date) QCImpossibleLocation (class in aiqclib.prepare.features.qc_impossible_location) QCItemFeatureBase (class in aiqclib.prepare.features.qc_item_base) QCNeighborStencilBase (class in aiqclib.prepare.features.qc_item_base) QCPressureIncreasing (class in aiqclib.prepare.features.qc_pressure_increasing) QCRegionalRange (class in aiqclib.prepare.features.qc_regional_range) QCSpike (class in aiqclib.prepare.features.qc_spike) QCStuckValue (class in aiqclib.prepare.features.qc_stuck_value) QCTempToPsal (class in aiqclib.prepare.features.qc_temp_to_psal)

R

RandomForest (class in aiqclib.train.models.random_forest) read_config() (in module aiqclib) (in module aiqclib.common.utils.config) (in module aiqclib.interface.config) read_input_data() (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase method) read_input_file() (in module aiqclib.common.utils.file) read_models() (aiqclib.classify.step6_classify_dataset.dataset_all_suite.ClassifyAllSuite method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) (aiqclib.train.step4_build_model.build_model_suite.BuildModelSuite method) read_normalization_file() (in module aiqclib.common.utils.normalization) read_shap_scores() (in module aiqclib) (in module aiqclib.common.utils.shap_io) (in module aiqclib.interface.shap_io)

read_test_sets() (aiqclib.train.step1_read_input.input_base.InputTrainingSetBase method) read_training_set() (aiqclib.train.step1_read_input.input_base.InputTrainingSetBase method) remove_years() (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase method) rename_columns() (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase method) REPORT_SCHEMA (in module aiqclib.nrtqc.step4_compare_flags.compare_base) reports (aiqclib.nrtqc.step4_compare_flags.compare_base.CompareFlagsBase attribute) (aiqclib.train.step2_validate_model.validate_base.ValidationBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) required_column_names() (in module aiqclib.common.utils.input_validation) run_nrt_qc() (in module aiqclib) (in module aiqclib.interface.nrtqc) run_qc_items() (aiqclib.nrtqc.step2_run_qc.qc_base.QCDataSetBase method)

S

safe_predict() (aiqclib.common.base.scikit_learn_model_base.SklearnModelBase method) save_model() (aiqclib.common.base.model_base.ModelBase method) scalar_param_names (aiqclib.prepare.features.qc_density_inversion.QCDensityInversion attribute) (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase attribute) (aiqclib.prepare.features.qc_item_base.QCNeighborStencilBase attribute) (aiqclib.prepare.features.qc_stuck_value.QCStuckValue attribute) (aiqclib.prepare.features.qc_temp_to_psal.QCTempToPsal attribute) scale_first() (aiqclib.common.base.feature_base.FeatureBase method) (aiqclib.prepare.features.basic_values.BasicValues method) (aiqclib.prepare.features.day_of_year.DayOfYearFeat method) (aiqclib.prepare.features.flank_down.FlankDown method) (aiqclib.prepare.features.flank_up.FlankUp method) (aiqclib.prepare.features.location.LocationFeat method) (aiqclib.prepare.features.profile_summary.ProfileSummaryStats method) (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase method) scale_flat_columns() (in module aiqclib.common.utils.normalization) scale_nested_columns() (in module aiqclib.common.utils.normalization) scale_second() (aiqclib.common.base.feature_base.FeatureBase method) (aiqclib.prepare.features.basic_values.BasicValues method) (aiqclib.prepare.features.day_of_year.DayOfYearFeat method) (aiqclib.prepare.features.flank_down.FlankDown method) (aiqclib.prepare.features.flank_up.FlankUp method) (aiqclib.prepare.features.location.LocationFeat method) (aiqclib.prepare.features.profile_summary.ProfileSummaryStats method) (aiqclib.prepare.features.qc_item_base.QCItemFeatureBase method) SCALING_TYPES (in module aiqclib.common.utils.normalization) select() (aiqclib.common.base.config_base.ConfigBase method) (aiqclib.common.config.classify_config.ClassificationConfig method) (aiqclib.common.config.dataset_config.DataSetConfig method) (aiqclib.common.config.nrtqc_config.NRTQCConfig method) (aiqclib.common.config.training_config.TrainingConfig method) select_all_profiles() (aiqclib.classify.step3_select_profiles.dataset_all.SelectDataSetAll method) select_all_rows() (aiqclib.classify.step4_select_rows.dataset_all.LocateDataSetAll method) (aiqclib.prepare.step4_select_rows.dataset_all.LocateDataSetAll method) SELECT_CLASSIFY_REGISTRY (in module aiqclib.common.loader.classify_registry) SELECT_DATASET_REGISTRY (in module aiqclib.common.loader.dataset_registry) select_negative_profiles() (aiqclib.prepare.step3_select_profiles.dataset_a.SelectDataSetA method) (aiqclib.prepare.step3_select_profiles.dataset_all.SelectDataSetAll method) select_negative_rows() (aiqclib.prepare.step4_select_rows.dataset_a.LocateDataSetA method) select_negative_rows_closest_day() (aiqclib.prepare.step4_select_rows.dataset_a.LocateDataSetA method) select_negative_rows_neighbor_n() (aiqclib.prepare.step4_select_rows.dataset_a.LocateDataSetA method) select_positive_profiles() (aiqclib.prepare.step3_select_profiles.dataset_a.SelectDataSetA method) (aiqclib.prepare.step3_select_profiles.dataset_all.SelectDataSetAll method) select_positive_rows() (aiqclib.prepare.step4_select_rows.dataset_a.LocateDataSetA method)

SelectDataSetA (class in aiqclib.prepare.step3_select_profiles.dataset_a) SelectDataSetAll (class in aiqclib.classify.step3_select_profiles.dataset_all) (class in aiqclib.prepare.step3_select_profiles.dataset_all) selected_profiles (aiqclib.prepare.step3_select_profiles.select_base.ProfileSelectionBase attribute) (aiqclib.prepare.step4_select_rows.locate_base.LocatePositionBase attribute) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) selected_rows (aiqclib.prepare.step4_select_rows.locate_base.LocatePositionBase attribute) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) set_base_class() (aiqclib.common.base.config_base.ConfigBase method) set_enable_shap() (aiqclib.train.models.model_suite.ModelSuite method) SHAP_COLUMN_SUFFIX (in module aiqclib.common.utils.shap_io) shap_values (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) short_name (aiqclib.common.base.model_base.ModelBase attribute) (aiqclib.train.models.decision_tree.DecisionTree attribute) (aiqclib.train.models.gaussian_naive_bayes.GaussianNaiveBayes attribute) (aiqclib.train.models.k_nearest_neighbors.KNearestNeighbors attribute) (aiqclib.train.models.linear_discriminant_analysis.LinearDiscriminantAnalysis attribute) (aiqclib.train.models.logistic_regression.LogisticRegression attribute) (aiqclib.train.models.model_suite.ModelSuite attribute) (aiqclib.train.models.multilayer_perceptron.MultilayerPerceptron attribute) (aiqclib.train.models.random_forest.RandomForest attribute) (aiqclib.train.models.support_vector_machine.SupportVectorMachine attribute) (aiqclib.train.models.xgboost.XGBoost attribute) sigma0() (in module aiqclib.common.utils.seawater) SINGLE_MODEL_REGISTRY (in module aiqclib.common.loader.single_model_registry) SklearnModelBase (class in aiqclib.common.base.scikit_learn_model_base) SPLIT_DATASET_REGISTRY (in module aiqclib.common.loader.dataset_registry) split_test_set() (aiqclib.prepare.step6_split_dataset.dataset_a.SplitDataSetA method) (aiqclib.prepare.step6_split_dataset.dataset_all.SplitDataSetAll method) (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method) SplitDataSetA (class in aiqclib.prepare.step6_split_dataset.dataset_a) SplitDataSetAll (class in aiqclib.prepare.step6_split_dataset.dataset_all) SplitDataSetBase (class in aiqclib.prepare.step6_split_dataset.split_base) step_name (aiqclib.common.base.dataset_base.DataSetBase attribute) summarised_reports (aiqclib.train.step2_validate_model.validate_base.ValidationBase attribute) SUMMARY_CLASSIFY_REGISTRY (in module aiqclib.common.loader.classify_registry) SUMMARY_DATASET_REGISTRY (in module aiqclib.common.loader.dataset_registry) summary_stats (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase attribute) (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) summary_stats_observation (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase attribute) summary_stats_profile (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase attribute) SummaryDataSetA (class in aiqclib.prepare.step2_calc_stats.dataset_a) SummaryDataSetAll (class in aiqclib.classify.step2_calc_stats.dataset_all) SummaryStatsBase (class in aiqclib.prepare.step2_calc_stats.summary_base) SupportVectorMachine (class in aiqclib.train.models.support_vector_machine)

T

target_features (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase attribute) (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase attribute) test() (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll method) (aiqclib.classify.step6_classify_dataset.dataset_all_suite.ClassifyAllSuite method) (aiqclib.common.base.model_base.ModelBase method) (aiqclib.common.base.scikit_learn_model_base.SklearnModelBase method) (aiqclib.train.models.model_suite.ModelSuite method) (aiqclib.train.step4_build_model.build_model.BuildModel method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) (aiqclib.train.step4_build_model.build_model_suite.BuildModelSuite method) test_cols (aiqclib.classify.step6_classify_dataset.dataset_all.ClassifyAll attribute) test_sets (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase attribute) (aiqclib.train.step1_read_input.input_base.InputTrainingSetBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute)

test_targets() (aiqclib.classify.step6_classify_dataset.dataset_all_suite.ClassifyAllSuite method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) (aiqclib.train.step4_build_model.build_model_suite.BuildModelSuite method) test_value_expr() (aiqclib.prepare.features.qc_gradient.QCGradient method) (aiqclib.prepare.features.qc_item_base.QCNeighborStencilBase method) (aiqclib.prepare.features.qc_spike.QCSpike method) train_and_evaluate() (in module aiqclib) (in module aiqclib.interface.train) training_sets (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase attribute) (aiqclib.train.step1_read_input.input_base.InputTrainingSetBase attribute) (aiqclib.train.step2_validate_model.validate_base.ValidationBase attribute) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase attribute) TrainingConfig (class in aiqclib.common.config.training_config)

U

update_feature_param_with_stats() (aiqclib.common.base.config_base.ConfigBase method) update_model_score() (aiqclib.common.base.model_base.ModelBase method)

update_nthreads() (aiqclib.common.base.model_base.ModelBase method) (aiqclib.common.base.scikit_learn_model_base.SklearnModelBase method) (aiqclib.train.models.model_suite.ModelSuite method)

V

validate() (aiqclib.common.base.config_base.ConfigBase method) (aiqclib.train.step2_validate_model.kfold_validation.KFoldValidation method) (aiqclib.train.step2_validate_model.kfold_validation_suite.KFoldValidationSuite method) (aiqclib.train.step2_validate_model.validate_base.ValidationBase method)

validate_and_convert_input_columns() (in module aiqclib.common.utils.input_validation) validate_input_columns() (aiqclib.prepare.step1_read_input.input_base.InputDataSetBase method) ValidationBase (class in aiqclib.train.step2_validate_model.validate_base)

W

worst_flag() (in module aiqclib.common.utils.qc_flags) write_config_template() (in module aiqclib) (in module aiqclib.interface.config) write_data_sets() (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method) write_merged_data() (aiqclib.nrtqc.step3_concat_flags.concat_base.ConcatFlagsBase method) write_merged_predictions() (aiqclib.classify.step7_concat_datasets.concat_base.ConcatDatasetsBase method) write_model_scores() (aiqclib.train.step2_validate_model.validate_base.ValidationBase method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) write_models() (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) write_normalization_file() (in module aiqclib.common.utils.normalization) write_predictions() (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method)

write_qc_data() (aiqclib.nrtqc.step2_run_qc.qc_base.QCDataSetBase method) write_reports() (aiqclib.nrtqc.step4_compare_flags.compare_base.CompareFlagsBase method) (aiqclib.train.step2_validate_model.validate_base.ValidationBase method) (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) write_selected_profiles() (aiqclib.prepare.step3_select_profiles.select_base.ProfileSelectionBase method) write_selected_rows() (aiqclib.prepare.step4_select_rows.locate_base.LocatePositionBase method) write_shap_values() (aiqclib.train.step4_build_model.build_model_base.BuildModelBase method) write_summary_stats() (aiqclib.prepare.step2_calc_stats.summary_base.SummaryStatsBase method) write_target_features() (aiqclib.prepare.step5_extract_features.extract_base.ExtractFeatureBase method) write_test_sets() (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method) write_training_sets() (aiqclib.prepare.step6_split_dataset.split_base.SplitDataSetBase method)

X

XGBoost (class in aiqclib.train.models.xgboost)